1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcttggaaataaccttttttgtccttgcaataaaataagttaccccttggcccttgtatgattgtatcattaatatttctgtggattactatgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAGATCAACCTCATCTCTTTCAATCCCCATAGCGGGTCACAATTCAAGCCC
species | Oryza sativa |
transcript | LOC_Os01g45370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAG TGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAEST: gi|86841732|gb|CI337411.1|CI337411
genomic: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAGgtgaggaacc ... atgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAA
EST: AGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAG TGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAEST: gi|87029242|gb|CI276510.1|CI276510
genomic: AGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAGgtgaggaacc ... atgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAA
EST: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAG TGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAEST: gi|33654818|gb|CF277432.1|CF277432
genomic: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAGgtgaggaacc ... atgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAA
EST: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAG TGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAA
genomic: AAGTACAAAGTGTTTTTTGAATACGTCATGCTTGCTGGAGTGAACGACAGgtgaggaacc ... atgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAA
cttggcccttgtatgattgtatcattaatatttctgtggattactatgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAGATCAACCTCATCTCTTTCAATCCCCATAGCGGGTCACAATTCAAGCCC
cattaat putative branch site (score: 2)
tatgattgtatcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttggaaataaccttttttgtccttgcaataaaataagttaccccttggcccttgtatgattgtatcattaatatttctgtggattactatgcttacagTGTGGATGACGCGAAGAGACTAGTAGATTTAGTTCGCGGGATCCCTTGCAAGATCAACCTCATCTCTTTCAATCCCCATAGCGGGTCACAATTCAAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - -gaaataa
- - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgt