Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g45274.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G121878_T06 (Zea mays), 3'ss of exon 5
gtaaccaacttcatcgtacgcgttttcgt-cgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG----------------------------------------------
               |||||    | ||  |     ||| ||||    |      |   |  | | |      | |   |   | | |    | |  |   ||| |   ||    |||||||||||||| |||| |||  |||||| ||||||||||||||||| ||||| ||||||                                              
---------------gtacgtacgtacgagcaaacaccgatcgacgcatgcaacggtggtatcagcca-----cactaatattactcacacggtcgtcttccgttt---tggccaaactgcagATCAAGTACGCCGGCACCGGGTCCGCCATCGAGTACGCCGTGTGCGCGCTCAAGGTGCAGGTCATCGTGGTCATTGGCCACAGCTGCTGCGGTGGCATCA

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G348512_T01 (Zea mays), 3'ss of exon 4
gtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG----------------------------------------------
               ||  ||     || |||  | ||   |  | ||| ||   |  |         |    | ||  |  |  || |    | | | |  | | |||   || |||||||| |||| |||| |||||||| || ||||||||||||||||||||||||||||||                                              
---------------gtgagcacacgcg-cgcacgacgcatgcatcgtacgcctcccctggtaacaactgtgtgtggcctctagcgact----cacgcgtactat-tgtcgatcgactgcagACCAAGTACGCCGGCGTCGGCTCCGCCATCGAGTACGCCGTCTGCGCCCTCAAGGTGGAGGTCATCGTGGTCATAGGCCACAGCCGCTGCGGCGGGATCA

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G121878_T04 (Zea mays), 3'ss of exon 3
gtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG----------------------------------------------
                        |   |   |   | | |||||| | | | |   | |    ||  |  |  |          |     | || | |    || |  | ||| |||||||| |||| || | ||| ||||||| |||||||||||||| || ||||| ||||||                                              
-----------------------gtatatatacacactgacgattg-tgaacaacgcaatggtctcaatttctactcacacggccggccgcggcctctc----gttttcgtgtcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCAAGGTGGAGGTCCTCGTGGTCATTGGCCATAGCTGCTGCGGTGGCATCA

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G348512_T04 (Zea mays), 3'ss of exon 4
gtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccgg--tcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG------------------------
                                       || | |  |    ||  | |||| |  |||| ||| ||||    |||| ||  | |    |     || |  | ||| |||||||| |||| || | ||| ||||||| ||||||||||||||||| ||||| ||||||                        
------------------------------------gtatctagtttttttttattttttcctggctcgggcgc-gcgg---acattaat--taattgacagTTCGTTTTCGTGTCGACTGCAGACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCCGTGTGCGCGCTCAAGGTGGAGGTCCTCGTGGTCATTGGC

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G348512_T06 (Zea mays), 3'ss of exon 4
gtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccgg--tcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG----------------------------------------------
                                       || | |  |    ||  | |||| |  |||| ||| ||||    |||| ||  | |    |     || |  | ||| |||||||| |||| || | ||| ||||||| ||||||||||||||||| ||||| ||||||                                              
------------------------------------gtatctagtttttttttattttttcctggctcgggcgc-gcgg---acattaat--taattgacagttcgttttcgtgtcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCCGTGTGCGCGCTCAAGGTGGAGGTCCTCGTGGTCATTGGCCACAGCTGCTGCGGTGGCATCA

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G094165_T06 (Zea mays), 3'ss of exon 4
gtaaccaacttcatcgtacgcgtttt-cgt-cgccggccggtcgattggtaagcta-gctattccggtcggtcgcc-gcggtt--tgcattgattttgacccccc-tcgtgtgtgtgcgtcaac-tgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG----------------------------------------------
|||||   |     ||  | |||  | |   ||||  ||||  |     |   | | | | |  |      || |  || | |  ||  |||  |||     |    | |   |         | |||||| |||| || | ||| ||||||| ||||||||||||||||| ||||||||||||                                              
gtaacgcgcgcgcgcgcgctcgtcgtacacacgccacccggcggcgcaatggacgacgttctcacaacaactcactagcagctactgtgttgcctttcgttacttaccatcaatcaataattgcatgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCCGTGTGCGCCCTCAAGGTGGAGGTCCTCGTGGTCATCGGCCACAGCTGCTGCGGTGGCATCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38471649|gb|CF955780.1|CF955780
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38471231|gb|CF955362.1|CF955362
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29615755|gb|CB620767.1|CB620767
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58591077|gb|CF989385.1|CF989385
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38476030|gb|CF960163.1|CF960163
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58590664|gb|CF988972.1|CF988972
EST:     CAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGGCATCGAGTACGCCGTCTG-GCCCTC
genomic: CAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29615754|gb|CB620766.1|CB620766
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475997|gb|CF960130.1|CF960130
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGA
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGA
EST: gi|11442961|gb|BF430857.1|BF430857
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38477597|gb|CF961730.1|CF961730
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|4715141|gb|AU056258.1|AU056258
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481330|gb|CF965419.1|CF965419
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33676856|gb|CF305095.1|CF305095
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38479707|gb|CF963796.1|CF963796
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475423|gb|CF959556.1|CF959556
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38483318|gb|CF967120.1|CF967120
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442915|gb|BF430814.1|BF430814
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29682701|gb|CB678976.1|CB678976
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58613056|gb|CK040768.1|CK040768
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTG
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCT-
EST: gi|36355243|gb|CF589207.1|CF589207
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|87012647|gb|CI295091.1|CI295091
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38480149|gb|CF964238.1|CF964238
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33686819|gb|CF315058.1|CF315058
EST:     CATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442940|gb|BF430837.1|BF430837
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29684733|gb|CB681008.1|CB681008
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481171|gb|CF965260.1|CF965260
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCGCGGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481454|gb|CF965543.1|CF965543
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38482391|gb|CF966431.1|CF966431
EST:     AGG-CTTCACCGTCCGC-ACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCGAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58594834|gb|CF993142.1|CF993142
EST:     AGGGCTTCCCCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCCAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33665509|gb|CF296476.1|CF296476
EST:     CAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58611704|gb|CK039416.1|CK039416
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29689634|gb|CB685909.1|CB685909
EST:     CGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29682804|gb|CB679079.1|CB679079
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29685979|gb|CB682254.1|CB682254
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442622|gb|BF430525.1|BF430525
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475550|gb|CF959683.1|CF959683
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|4715140|gb|AU056257.1|AU056257
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442977|gb|BF430873.1|BF430873
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475763|gb|CF959896.1|CF959896
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29684734|gb|CB681009.1|CB681009
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38476134|gb|CF960267.1|CF960267
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481661|gb|CF965750.1|CF965750
EST:     ACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: ACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481869|gb|CF965938.1|CF965938
EST:     AACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTGACGCCGTCTGCGCCCT
genomic: AACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGT-ACGCCGTCTGCGCCCT
EST: gi|29664042|gb|CB660317.1|CB660317
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38473166|gb|CF957298.1|CF957298
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58585665|gb|CF983973.1|CF983973
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|13904802|gb|BF889440.1|BF889440
EST:     ACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: ACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38482639|gb|CF966593.1|CF966593
EST:     GGCCTTCACCCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GGCCTTCA-CCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|8956162|gb|BE229966.1|BE229966
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGCTCGGCCATCGAGTACTCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29686023|gb|CB682298.1|CB682298
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38477036|gb|CF961169.1|CF961169
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38468697|gb|CF952828.1|CF952828
EST:     AGGCCTTCACCGTCCGCAACATCGCCAATATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38480358|gb|CF964447.1|CF964447
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG
                    ttttgac  putative branch site (score: 3)
               attgatttt  TA-rich tract