1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatccaggaaaaatcacaaaacattctgttctacaaaatggtttgaagggcaaagcgcataaacacaactttgctaaaataaatcatcatatgatacagATTTCGCTAGGAAGATCCTTTTACCAGGACGGCCTTCAGAAGAAACAAGAGTTGGAGACATTATGACAGAAGAG
species | Oryza sativa |
transcript | LOC_Os01g44360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAGTCTGGGGATGAGAAGCAGCTGGCAGGAATCGTAACTGAGAGAG ATTTCGCTAGGAAGATCCTTTTACCAGGACGGCCTTCAGAAGAAACAAGAG
genomic: GCTCAAGTCTGGGGATGAGAAGCAGCTGGCAGGAATCGTAACTGAGAGAGgtaagatgaa ... tatgatacagATTTCGCTAGGAAGATCCTTTTACCAGGACGGCCTTCAGAAGAAACAAGAG
gaagggcaaagcgcataaacacaactttgctaaaataaatcatcatatgatacagATTTCGCTAGGAAGATCCTTTTACCAGGACGGCCTTCAGAAGAAACAAGAGTTGGAGACATTATGACAGAAGAG
tgctaaa putative branch site (score: 1)
taaaataaatcatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatccaggaaaaatcacaaaacattctgttctacaaaatggtttgaagggcaaagcgcataaacacaactttgctaaaataaatcatcatatgatacagATTTCGCTAGGAAGATCCTTTTACCAGGACGGCCTTCAGAAGAAACAAGAGTTGGAGACATTATGACAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - aggaaaa
- - - - - - - -cacaaaa
- - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa