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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagatgacatgcttgaagttgtatatactagttagcactgtattttctctatccttctgttggtatttttacgtgttgataacaaattcacaatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGACCCCTTTGTACTCGACTTATTACAGCAGCCGAAAGTCTGTTCACCTTGC

Basic information

species Oryza sativa
transcript LOC_Os01g43680.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88736109|gb|CI759617.1|CI759617
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88358481|gb|CI617567.1|CI617567
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88389165|gb|CI597963.1|CI597963
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88364938|gb|CI616357.1|CI616357
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88371295|gb|CI600143.1|CI600143
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88719728|gb|CI743238.1|CI743238
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88431664|gb|CI576855.1|CI576855
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88729836|gb|CI753057.1|CI753057
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88317350|gb|CI627999.1|CI627999
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88330923|gb|CI638331.1|CI638331
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88732428|gb|CI755605.1|CI755605
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: gi|88428576|gb|CI565044.1|CI565044
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGCAG                       
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCT---Ggtacttggct ... caatcagc
EST: gi|88391747|gb|CI603266.1|CI603266
EST:     CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG                         GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctatccttctgttggtatttttacgtgttgataacaaattcacaatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGACCCCTTTGTACTCGACTTATTACAGCAGCCGAAAGTCTGTTCACCTTGC
                               tgataac  putative branch site (score: 2)
                                 ataacaaatt  TA-rich tract