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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcttgatctcctgaaacctttcatattcatgataatagaatctcataattctcactgaatttttaattttccatgcattgcagGTGAGGCGGTCACATTTACAGGAGAATCCTTTTCCTTTGTGGTTCTTTGTTCTTGACGACATTGGGTGTGTAAAAATTGAGAATGTATGTTAAGGTTGAA

Basic information

species Oryza sativa
transcript LOC_Os01g43680.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88391788|gb|CI603307.1|CI603307
EST:     TACAGCAGCCGAAAGTCTGTTCACCTTGCTGTGTTTTTCCGTGTGATTGT                         GTGAGGCGGTCACATTTACAGGAGAATCCTTTTCCTTTGTGGTTCTTTGTT
genomic: TACAGCAGCCGAAAGTCTGTTCACCTTGCTGTGTTTTTCCGTGTGATTGTgtatgtctct ... tgcattgcagGTGAGGCGGTCACATTTACAGGAGAATCCTTTTCCTTTGTGGTTCTTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgataatagaatctcataattctcactgaatttttaattttccatgcattgcagGTGAGGCGGTCACATTTACAGGAGAATCCTTTTCCTTTGTGGTTCTTTGTTCTTGACGACATTGGGTGTGTAAAAATTGAGAATGTATGTTAAGGTTGAA
                                      ttttccat  CT-rich tract
                         actgaatttttaattt  TA-rich tract