1 5' 3' | 2 5' 3' | 3 5' 3' |
GATCCGATTTTGATCTCCCCGCCGCCGACGAATTCGTCGAGACCCGCCCTCGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggctccatggacctatctttgatcttattatgattcttattacggttttaatcttctatatatatcggttgtggcttgtaattgggggaatagg...
species | Oryza sativa |
transcript | LOC_Os01g43680.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88358481|gb|CI617567.1|CI617567
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88389165|gb|CI597963.1|CI597963
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88364938|gb|CI616357.1|CI616357
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88371295|gb|CI600143.1|CI600143
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88719728|gb|CI743238.1|CI743238
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88431664|gb|CI576855.1|CI576855
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88729836|gb|CI753057.1|CI753057
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88317350|gb|CI627999.1|CI627999
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88330923|gb|CI638331.1|CI638331
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88732428|gb|CI755605.1|CI755605
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGAEST: gi|88428576|gb|CI565044.1|CI565044
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGCAGEST: gi|88391747|gb|CI603266.1|CI603266
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCT---Ggtacttggct ... caatcagc
EST: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTG GATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
genomic: CGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggct ... caatcagcagGATTGCAGGAATATAACAAAACTTAAGCACTGAGCAGCAGTATGCCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCGATTTTGATCTCCCCGCCGCCGACGAATTCGTCGAGACCCGCCCTCGCCGTACCTGCCCAACGGTGCTCGATTTGGTTGTAGCCTTCTGGTTCTGgtacttggctccatggacctatctttgatcttattatgattcttattacggttttaatcttctatatatatcggttgtggcttgtaattgggggaatagg
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