Sequence
atgc intronic sequence ATGC exonic sequence...catctaccatcaccttgtcatgtgccacggcctgaccagccaacacctctcgtgccgcctaaagggcatcgtgatgatccacccgtggttctggggcaagGAGCCCATCGGCGGCAAGGCGGCGACATGGGGAGCAGAAGGGGCTATGGGAGTTCGTGTGCCCCGACGCGGCGGACGGCGCGGATGACCCCCAGATGAAC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g43670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctctcgtgccgcctaaagggcatcgtgatgatccacccgtggttctggggcaagGAGCCCATCGGCGGCAAGGCGGCGACATGGGGAGCAGAAGGGGCTATGGGAGTTCGTGTGCCCCGACGCGGCGGACGGCGCGGATGACCCCCAGATGAAC
gcctaaa putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catctaccatcaccttgtcatgtgccacggcctgaccagccaacacctctcgtgccgcctaaagggcatcgtgatgatccacccgtggttctggggcaagGAGCCCATCGGCGGCAAGGCGGCGACATGGGGAGCAGAAGGGGCTATGGGAGTTCGTGTGCCCCGACGCGGCGGACGGCGCGGATGACCCCCAGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
catctac
- - - - - - - - - catgtgc
- - - - - - - - - - - - - -cggcctg
- - - - - - - - - - - - - - - - - -ccagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccaccc