1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcacttaccattacaatacaaaaggcagatgctcaatgccttatagtatgttgccaccggtccttattaaattattctttttccctattcgggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTTTGCTTTCACTGAAGGTTGAAGAGAGAAAGGTTGTGGTGGACAAGGAAT
species | Oryza sativa |
transcript | LOC_Os01g41880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGAGGGTGAATCAAATGAAGAGGAAGAAAAGGAACCTGAAGACAAG GAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTEST: gi|66913309|gb|CX100157.1|CX100157
genomic: ACAAGGAGGGTGAATCAAATGAAGAGGAAGAAAAGGAACCTGAAGACAAGgtataattcc ... gggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
EST: ACAAGGAGGGTGAATCAAATGAAGAGGAAGAAAAGGAACCTGAAGACAAG GAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTEST: gi|30227596|gb|CB965488.1|CB965488
genomic: ACAAGGAGGGTGAATCAAATGAAGAGGAAGAAAAGGAACCTGAAGACAAGgtataattcc ... gggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
EST: ACAAGGAGGGTGAATCACATGAAGAGGAAGAAAAGGAACCTGAAGACAAG GAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTEST: gi|86502604|gb|CI145237.1|CI145237
genomic: ACAAGGAGGGTGAATCAAATGAAGAGGAAGAAAAGGAACCTGAAGACAAGgtataattcc ... gggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
EST: GAAAAGGAACCTGAAGACAAG GAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTEST: gi|286956|gb|D15763.1|D15763
genomic: GAAAAGGAACCTGAAGACAAGgtataattcc ... gggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
EST: AGGAACCTGAAGACAAG GAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
genomic: AGGAACCTGAAGACAAGgtataattcc ... gggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCT
gtatgttgccaccggtccttattaaattattctttttccctattcgggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTTTGCTTTCACTGAAGGTTGAAGAGAGAAAGGTTGTGGTGGACAAGGAAT
ttctttttccctattc CT-rich tract
tccttattaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacttaccattacaatacaaaaggcagatgctcaatgccttatagtatgttgccaccggtccttattaaattattctttttccctattcgggtacacagGAGATGACTTTGGAGGAATATGAGAAAGTACTGGAGGAGAAGAGGAAAGCTTTGCTTTCACTGAAGGTTGAAGAGAGAAAGGTTGTGGTGGACAAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - tacaaaa
- - - - - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - tgttgcc