1 5' 3' | 2 5' 3' |
CTCCACCTTCTGCGGCGCCGCCAACTCCCTCTCCCAGCTCTACACCCAGGCCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacacctccctccctccctccctttccccccatctccccctccacctctcgcggttcggtcgtcgggaattcgattggttccttggcttccgcct...
species | Oryza sativa |
transcript | LOC_Os01g40690.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTC GAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCEST: gi|88421754|gb|CI621398.1|CI621398
genomic: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacac ... aattgtgcagGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
EST: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTC GAAAAACTCCACCAGTGGATATTGAGAAAGCACGAGGAAGAGTCGAGGCTCEST: gi|32948314|gb|BP184886.1|BP184886
genomic: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacac ... aattgtgcagGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
EST: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTC GAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCEST: gi|218495366|gb|FG958231.1|FG958231
genomic: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacac ... aattgtgcagGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
EST: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTC GAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTCEST: gi|218496837|gb|FG946813.1|FG946813
genomic: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacac ... aattgtgcagGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
EST: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTC GAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
genomic: CCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacac ... aattgtgcagGAAAAACTCCACCAGTGGATATTGAGAAAGCATGAGGAAGAGTCGAGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCACCTTCTGCGGCGCCGCCAACTCCCTCTCCCAGCTCTACACCCAGGCCATGGCCCAGCAGAAGCTCTCCTTCCAGGCCGGCGAGCGCCACTCCCTCgtccgtacacctccctccctccctccctttccccccatctccccctccacctctcgcggttcggtcgtcgggaattcgattggttccttggcttccgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttccgcc