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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACCTCTTCGGCTCCATCCCGGTCAGGCTGGCCCTGCTGCCCCGCCTCCTCGCCCTCGACGTCAGGAACAACACCCTCACCGGCAGCGTGCCCTCCGgtaatccatcaactaactcgagcgcgattggtgtcagcttcagctctggctagctaattgggggtttgattgattgatttgtgtgttgcttcaccaag

Basic information

species Oryza sativa
transcript LOC_Os01g39600.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39600.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G100911_T01 (Zea mays), 5'ss of exon 2
AACAACCTCTTCGGCTCCATCCCGGTCAGGCTGGCCCTGCTGCCCCGCCTCCTCGCC---CTCGACGTCAGGAACAACACCCTCACCGGCAGCGTGCCCTCCGgtaatccatcaactaactcg-agcgcgattggtgtcagcttcagctctggctagctaattgggggtttgattgattgatttgtgtgttgcttca--ccaag
      ||||||||||| ||||| |||||||| || | ||||||| ||  ||| |     |||||||||||||||||| | |||||||||||||| ||| |||||||  | || |   | | | | |   ||  | |||   |||   | | |  ||| ||||     |     |||||| ||||  | ||||||    |||||
---CGTCTCTTCGGCTCTATCCCCGTCAGGCTCGCGCAGCTGCCCTGCAGCCTTGTGGTGCTCGACGTCAGGAACAACTCACTCACCGGCAGCGTACCCGCCGgtaacgcctctatccattagtatcataatctgggtcg--ttcgatttttgaaagc-aattaacaat---gctgattgctttgcctcttgcttggtcccaag

upper sequence: LOC_Os01g39600.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G165428_T01 (Zea mays), 5'ss of exon 2
AACAACCTCTTCGGCTCCATCCCGGTCAGGCTGGCCCTGCTGCCCCGCCTCCTCGCCCTCGACGTCAGGAACAACACCCTCACCGGCAGCGTGCCCTCCGgtaatccatcaactaactcgagcgcgattggtgtcagcttcagctctggctagctaattgggggtttgattgattgatttgtgtgttgcttcaccaag
|||  |||||||||||||||||| |||||||| || | ||||||| ||||  |||| |||||||||||||||||| | ||||| |||||||||||| |||||||    || |   | | |       |  | |||  |  |   | | |  |||  ||        ||| || ||    ||  || ||| || |||||
AACCGCCTCTTCGGCTCCATCCCCGTCAGGCTCGCGCAGCTGCCCAGCCTTGTCGCGCTCGACGTCAGGAACAACTCACTCACTGGCAGCGTGCCCGCCGgtaaagactccatccatttg-------tctgcgtcgac--cgatttttgagagc-gataataaagctgactggttt-cctgcttgctgcgtc-ccaag