Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGCCCTTATGATCATGAGTTGTCAAAGTACCCTTGCCACAATTTTATGGAAAATGGAATGTGCATCAGAGGTGATAAATGCAAATTTTCTCATGTGgtacgtaatttaacaaatcattcactcttatttaattattggtgttatagcctggttaaattttaatattagcaaatgctgtgaattaagcaagctttgcactcgttgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g39100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39100.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G306357_T01 (Zea mays), 5'ss of exon 5
TGATTGCCCTTATGATCATGAGTTGTCAAAGTACCCTTGCCACAATTTTATGGAAAATGGAATGTGCATCAGAGGTGATAAATGCAAATTTTCTCATGTGgtacgtaatttaacaaatcattcactcttatttaattatt--ggtgttatagcctggttaaattttaatattagcaaatgctgtgaattaagcaagctttgcactcgttgtcag
 || || || ||||| ||||||||||||||||||   ||||| || | ||   | |||||||  ||   |||||||||||| |||||||| ||||||||||||||||||| | | ||| |||     |  |||| ||||    ||||  ||||||||  | || ||||| ||     |       | |||  |||   || || ||  | ||||
AGAGTGTCCATATGACCATGAGTTGTCAAAGTACGAATGCCATAACTATAAAAACAATGGAACATGTGCCAGAGGTGATAATTGCAAATTCTCTCATGTGgtacgtaattgacctaattatttctggtattttacttatctaagtgtagtagcctggg-acatgttaattttcattgaaa----aatttatacaaa--ttccattctctatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88463592|gb|CI696059.1|CI696059
EST:     TGGAAAATGGAATGTGCATCAGAGGTGATAAATGCAAATTTTCTCATGTG                         ATACCAACTGCAGAAGGTCCGTCCACACCAGATGCAAAGAAATCTAATGCG
genomic: TGGAAAATGGAATGTGCATCAGAGGTGATAAATGCAAATTTTCTCATGTGgtacgtaatt ... tcgttgtcagATACCAACTGCAGAAGGTCCGTCCACACCAGATGCAAAGAAATCTAATGCG