1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTCGGAAGAGAATATCTGCAGCTTGATCAGTTCCAAAACTGAGATATATCTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcgatcgctttgctttaatttgcactatttaatttgtccatgccactgacagattcctcctcttggcag
species | Oryza sativa |
transcript | LOC_Os01g38229.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGCTTGATCAGTTCCAAAAATTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|2427665|gb|C72128.1|C72128
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACC-G--G CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88370128|gb|CI585133.1|CI585133
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88735124|gb|CI758632.1|CI758632
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88299856|gb|CI577358.1|CI577358
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88730185|gb|CI753800.1|CI753800
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88745808|gb|CI769168.1|CI769168
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88405610|gb|CI588816.1|CI588816
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88312710|gb|CI587618.1|CI587618
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGTGACAAACCAATTTGAATTGCGGCTAGCGCCAGCACAGGCATEST: gi|33676436|gb|CF304675.1|CF304675
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAG-GACAAACCAATTTGAA-GGCGGCTAGCGCCAGCACAGGCAT
EST: AAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|33676380|gb|CF304619.1|CF304619
genomic: AAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|29635968|gb|CB640977.1|CB640977
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88741944|gb|CI764449.1|CI764449
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88730157|gb|CI753772.1|CI753772
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88735330|gb|CI758838.1|CI758838
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88367669|gb|CI568441.1|CI568441
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88410785|gb|CI578591.1|CI578591
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88744080|gb|CI767440.1|CI767440
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88444063|gb|CI594436.1|CI594436
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACC-G--G CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|572225|gb|D41736.1|D41736
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCA-CACAGGCATGCEST: gi|88762537|gb|CI772093.1|CI772093
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGCEST: gi|88386177|gb|CI570812.1|CI570812
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
EST: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAG CAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
genomic: CTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcga ... ctcttggcagCAGTTCAAGGACAAACCAATTTGAAGGCGGCTAGCGCCAGCACAGGCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGGAAGAGAATATCTGCAGCTTGATCAGTTCCAAAACTGAGATATATCTGCAGCTTGATCAGTTCCAAAACTTTAGCTGGGCACGCACTACCGGCAGgtatactcgatcgctttgctttaatttgcactatttaatttgtccatgccactgacagattcctcctcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT