1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGGCACCCCTTCGCCGTCACCGGCGTCGTCGCCACCGTCGGCACCGGCGGCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacctctctcccttgctcttcttcggttcccgaggttgtgctcggccattatcacttcatggttttgcttccggtagattgatttcgtggttct...
species | Oryza sativa |
transcript | LOC_Os01g37960.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGGEST: gi|29663359|gb|CB659634.1|CB659634
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
EST: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGGEST: gi|218485087|gb|FG957004.1|FG957004
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
EST: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGGEST: gi|58655078|gb|CK043758.1|CK043758
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
EST: GACCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGGEST: gi|58601345|gb|CK011873.1|CK011873
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
EST: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGGEST: gi|58658282|gb|CK046962.1|CK046962
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
EST: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAG GAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
genomic: GCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacc ... cgatcttcagGAAAGTGTGGAATGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCACCCCTTCGCCGTCACCGGCGTCGTCGCCACCGTCGGCACCGGCGGCCCTCCCTTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCGATGCAGgttcgctacctctctcccttgctcttcttcggttcccgaggttgtgctcggccattatcacttcatggttttgcttccggtagattgatttcgtggttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc