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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaattcaatatatgtaaattgttcagattcatccaagaatattctttagtaaaccattgttgatgatcagtgttaacatgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGTCCCAGGATCCAATCAAGATTCATCAGAATTACAGATCTGGTATTTCGTA

Basic information

species Oryza sativa
transcript LOC_Os01g37870.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29666486|gb|CB662761.1|CB662761
EST:     CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAG                         GGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
genomic: CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAGgtagaattca ... atgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
EST: gi|58665188|gb|CK053874.1|CK053874
EST:     CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAG                         GGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
genomic: CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAGgtagaattca ... atgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
EST: gi|29681711|gb|CB677986.1|CB677986
EST:     CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAG                         GGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
genomic: CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAGgtagaattca ... atgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
EST: gi|29681709|gb|CB677984.1|CB677984
EST:     CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAG                         GGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT
genomic: CAGGGAGCATCAAGGATCACAAGTCAAAGGCACCAAAAATAGTTGATAAGgtagaattca ... atgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagaatattctttagtaaaccattgttgatgatcagtgttaacatgttcgtagGGATCGGTTAGATCATCAGGTAACAAGTTATTCACCCTCATCCTCATGTGTCCCAGGATCCAATCAAGATTCATCAGAATTACAGATCTGGTATTTCGTA
                                      tgttaac  putative branch site (score: 2)
     aatattctttagtaaa  TA-rich tract