1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagataaatcttagtcgacaacgccccaaatcactcaaactcgtactgttccttttgaggctatggcaatgtaataactctacatgcaattttttcttcggtgaagAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTTCAGCTCTACTAATAAAACAATCCAGCTCTTGGAGACCAGTAGTAGCTTG
species | Oryza sativa |
transcript | LOC_Os01g37832.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTCAG AGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTTEST: gi|15847049|gb|BI795325.1|BI795325
genomic: CTAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTCAGgtgagataaa ... ttcggtgaagAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTT
EST: CTAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTCAG AGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTT
genomic: CTAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTCAGgtgagataaa ... ttcggtgaagAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTT
cttttgaggctatggcaatgtaataactctacatgcaattttttcttcggtgaagAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTTCAGCTCTACTAATAAAACAATCCAGCTCTTGGAGACCAGTAGTAGCTTG
taataac putative branch site (score: 34)
ttttttcttc putative PPT
aattttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagataaatcttagtcgacaacgccccaaatcactcaaactcgtactgttccttttgaggctatggcaatgtaataactctacatgcaattttttcttcggtgaagAGCATGGAAAGCAGATCGGTGTTGGATGCTGCTATCAGCTGTGATGACCTTCAGCTCTACTAATAAAACAATCCAGCTCTTGGAGACCAGTAGTAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA