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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaagatctacaaattcagatacatattgtcctcaattcagcatgaagaaaagattcagcaaaatgaaatggccattcaccgtgcagGGAGGCAAAGGCACGGTGAGGAACGTCACCTTCTCCAACGTGAGGGTGGCGAACGTGGCGACGCCGATCGCCATCGACCAGTTCTACTGCGACGCCGGCG

Basic information

species Oryza sativa
transcript LOC_Os01g36830.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36830.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G338158_T01 (Zea mays), 3'ss of exon 7
gtaaaaaaagatctacaaattcagatacatattgtcctcaattcagcatgaagaaaagattcagcaaaatgaaatggccattcaccgtgcagGGAGGCAAAGGCACGGTGAGGAACGTCACCTTCTCCAACGTGAGGGTGGCGAACGTGGCGACGCCGATCGCCATCGACCAGTTCTACTGCGACGCCGGCG
              || |  | | || |||||| |    ||     ||  |     || || ||||  ||||   |  ||| |     |||||| |||   ||| ||||| ||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||   ||||
-----------gtaacga--tgatatccatattatatataa----acaccaccttgagcttgagcagcatgaccggttcatcccatccgcagGGTGGCGTGGGCTCGGTGCGGAACATCACCTTCTCCAACGTCAGGGTGGCGAACGTGGCCACGCCCATCGCCATCGACCAGTTCTACTGCGACAGGGGCG

upper sequence: LOC_Os01g36830.1 (Oryza sativa), 3'ss of exon 6
lower sequence: EFJ18434 (Selaginella moellendorffii), 3'ss of exon 6
gtaaaaaaagatctacaaattcagatacatattgtcctcaattcagcatgaagaaaagattcagcaaaatgaaatggccattcaccgtgcagGGAGGCAAAGGCACGGTGAGGAACGTCACCTTCTCCAACGTGAGGGTGGCGAACGTGGCGACGCCGATCGCCATCGACCAGTTCTACTGCGACGCCGGCG
                                 || |||   |   | ||          |   || |   |||||  | | || |   ||||| ||    ||| | ||||| | ||||   |||  |||| |    |||   ||||||   |  ||||||| ||||||||||||||||||||||| | |  
---------------------------------gttctctcgttt-cttgtttcggttccttgtcatacacaaatgctcgtgcaac---cagGGCGGGTCTGGCTCCGTGAGCAGCGTCCATTTCCACAACATCGCCGTGCTCAACGTGAGCAATCCGATCGTCATCGACCAGTTCTACTGCGACGGCCGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattcagcatgaagaaaagattcagcaaaatgaaatggccattcaccgtgcagGGAGGCAAAGGCACGGTGAGGAACGTCACCTTCTCCAACGTGAGGGTGGCGAACGTGGCGACGCCGATCGCCATCGACCAGTTCTACTGCGACGCCGGCG
                            aaaatgaaat  TA-rich tract