Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCTCTCCAATACCTAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgtaattttgtcttctatattgaatgatttaagttctacacataatgcatttctacatacattaacaaagtctaataattgtgtacag

Basic information

species Oryza sativa
transcript LOC_Os01g36080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G006554_T01 (Zea mays), 5'ss of exon 1
----------------------------CAAAGGCTCTCCAATACCTAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgta---------attttgtct---tctatattgaatgatttaagttctacacataatgcatttcta--------catacattaacaaagtctaataattgtgtacag
                            |||||||||||||||||||| | ||||||||  ||||||||||||||||||| ||||| || |||||||||         |||||   |   ||| | | |||| || |   |||||  || ||   ||||| |        ||| |||| |   |  || |||| | |||||||
CATACCATTTTGCACGATATCTTTGCAGCAAAGGCTCTCCAATACCTACAAATCCTTGGGGTAGTACACAGAGATATAAAACCTGCGAATATTTTGgtatgtgcaaacatttttcttatatctgtgtagaatcatgtgc-ttctaagcagaacagatttccatctttttccatgcatttatggaagcttataactttgtacag