1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAGGAACACCATCTCAAGTGCTTATTTAGCAGATATTTGCTTGTGGCGAGACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAGgtttgttttctttgctacaggcattgctattcctgttcttggtttcggtgcagcggattagattggtctgctaacatctgagtgaaacaaatcttgatca...
species | Oryza sativa |
transcript | LOC_Os01g35580.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAG ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACEST: gi|33797156|gb|CF324443.1|CF324443
genomic: ACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAGgtttgttttc ... aactttacagACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCAC
EST: ACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAG ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACEST: gi|58675222|gb|CK063909.1|CK063909
genomic: ACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAGgtttgttttc ... aactttacagACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCAC
EST: ACAGAAATCGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAG ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCAC
genomic: ACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAGgtttgttttc ... aactttacagACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGAACACCATCTCAAGTGCTTATTTAGCAGATATTTGCTTGTGGCGAGACAGAAATTGGCCCTGTTTGTGCAACTAATTCCTTTCTTCTGTAACCAAGgtttgttttctttgctacaggcattgctattcctgttcttggtttcggtgcagcggattagattggtctgctaacatctgagtgaaacaaatcttgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa