Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGgtgagtatagctaggtgtaatgtcagttttccgtgacgttggttgaatatgctagtttagttcctggtctgcttttctttcatgtttcggaaccagaatttgatattttctttctatag

Basic information

species Oryza sativa
transcript LOC_Os01g35170.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g35170.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G054378_T03 (Zea mays), 5'ss of exon 6
TTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGgtgagtatagctaggtgtaatgtcagttttcc-gtgacgttggttgaatatgc------tagtttagttcctggtctgcttttctttcatgtttcggaaccagaa------tttgatattttctttctatag--------
 |||||||||||||||||||||||  |||||||  |  | ||    ||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||  |  ||||||     || |  |  ||||  |  |       || | |  |   || | || | ||   | |||||  ||||   |||      ||| | || |   |||  | |        
CTATTTTATGTTTGCAAATGCAACGATGTCTTTTGAGAAAATCATATCGTCATACCCTGGTCCCCTGTCACTTGTTTCAATACTGgtgagtgtagctgggtgctacatcagttccttagttatatctgttggctcagtgataattaatctgatcagtgctttgttatttcctgatgttatggaaatggaagtgagatttcagatgtctattcgctggttttgtag

upper sequence: LOC_Os01g35170.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G154087_T01 (Zea mays), 5'ss of exon 6
TTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGgtgagtatagctaggtgtaatgtcagttttcc-gtgacgttggttgaatatgc------tagtttagttcctggtctgcttttctttcatgtttcggaaccagaatttgatattttctttctatag---------------
 ||||||||||||||||||||||||||||||||  |  | ||    ||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||  |  ||||||     || |  |  ||||  |  |       || | |  |      | || | ||   | |||||  ||||   ||| | || ||||    | | ||                
CTATTTTATGTTTGCAAATGCAACAGTGTCTTTTGAGAAAATCATATCGTCATACCCTGGTCCCTTGTCACTTGTTTCAATACTGgtgagtgtagctgggtgctacatcagttccttagttatatctgttggctcagtgataattaatctgatcagcactttgttatttcctgatgttatggaaatggaact-gagatttcagatgtctattcgctggttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58693195|gb|CK081882.1|CK081882
EST:     ACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTG                         TGTCCTGATCCCCATT
genomic: ACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGgtgagtatag ... ctttctatagTGTCCTGATCCCCATT