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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaataacacttgcacacacacaattcttctcataatgttcttgctcacctccatgactattttgagttattcatcacccattgcttctgcacacagTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCG

Basic information

species Oryza sativa
transcript LOC_Os01g34850.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29618154|gb|CB623166.1|CB623166
EST:     ACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAG                         TGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCT
genomic: ACTGACCCTCTCAATTTATCCACATTTAACATCATCTTTGAGGTGATAAGgtaacaaata ... ctgcacacagTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcacctccatgactattttgagttattcatcacccattgcttctgcacacagTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCG
 tgctcac  putative branch site (score: 2)
                                       ttgcttct  putative PPT
                tattttgagttatt  TA-rich tract