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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtattttacctactattttttagttaattagtctactaactggtgggttcatacaagggctaatgtacatgtttttactgacatctcattgttttcttcttatcagGTCGCACGGGATTCTGCCGTCCTAA

Basic information

species Oryza sativa
transcript LOC_Os01g31880.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaagggctaatgtacatgtttttactgacatctcattgttttcttcttatcagGTCGCACGGGATTCTGCCGTCCTAA
                        tactgac  putative branch site (score: 1)
                                tctcattgttttcttc  CT-rich tract
                 atgttttta  TA-rich tract