1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttgtcttgtttttgagccgggtagcccccgacttcatgttgggacgactataggagtcgtagcatggagttgacttgattgttgcattgattcttgcagAAGATAGTCAATCGCTCTACTGCCAAGAGCGAGGCGCTGCGGAGCGTGTTTGACAATATCACAGAGATCGAGCAAATCTAG
species | Oryza sativa |
transcript | LOC_Os01g31670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
cgactataggagtcgtagcatggagttgacttgattgttgcattgattcttgcagAAGATAGTCAATCGCTCTACTGCCAAGAGCGAGGCGCTGCGGAGCGTGTTTGACAATATCACAGAGATCGAGCAAATCTAG
cattgat putative branch site (score: 4)
ttcttgc CT-rich tract
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcttgtttttgagccgggtagcccccgacttcatgttgggacgactataggagtcgtagcatggagttgacttgattgttgcattgattcttgcagAAGATAGTCAATCGCTCTACTGCCAAGAGCGAGGCGCTGCGGAGCGTGTTTGACAATATCACAGAGATCGAGCAAATCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- tgtcttg
- - - - - - -tgagccg
- - - - - - - - - - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc