1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttcttaattcatttgtgatatttgttattgtttctgttccatgagtacttagctactgttttctgtatactaatttattgtttgaatatgccaaaccagGCAGGGGAACTTATGAAAATTGATTATCAGAAGAAGGTAGCCCTACTTCATAAACAAAAGAAACGTGGTGTGAAACTCGAAACCCTTGAGAAGACTAAGG
species | Oryza sativa |
transcript | LOC_Os01g31580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTTGATAGGATGCTTGCATGNGGAGAAGAAATTGTATGATGAAGTGAAG GCAGGGGAACTTATGAAAATTGAGTATCAGAAGAAGGTAGCCCTACTTCAT
genomic: ACTTGATAGGATGCTTGCATG-GGAGAAGAAATTGTATGATGAAGTGAAGgtaatgaata ... gccaaaccagGCAGGGGAACTTATGAAAATTGATTATCAGAAGAAGGTAGCCCTACTTCAT
gtacttagctactgttttctgtatactaatttattgtttgaatatgccaaaccagGCAGGGGAACTTATGAAAATTGATTATCAGAAGAAGGTAGCCCTACTTCATAAACAAAAGAAACGTGGTGTGAAACTCGAAACCCTTGAGAAGACTAAGG
tactaat putative branch site (score: 15)
tatactaatttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttaattcatttgtgatatttgttattgtttctgttccatgagtacttagctactgttttctgtatactaatttattgtttgaatatgccaaaccagGCAGGGGAACTTATGAAAATTGATTATCAGAAGAAGGTAGCCCTACTTCATAAACAAAAGAAACGTGGTGTGAAACTCGAAACCCTTGAGAAGACTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - -ttgtgat
- - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - -ttccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga