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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctctactttcctaaatgcacttgtgtttcacccctccttttttttgttcgacgcttgatgttatgacacgtttgttttcgcagTGCTGACTCTTGCTCAGGCCGATACTGAAGCCCGTAGGATGATCGACGATGTGTCGGTCACTGAGTACAGCCAACTACTCACGCGGCAGGCGGCTGGCCG

Basic information

species Oryza sativa
transcript LOC_Os01g31460.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacccctccttttttttgttcgacgcttgatgttatgacacgtttgttttcgcagTGCTGACTCTTGCTCAGGCCGATACTGAAGCCCGTAGGATGATCGACGATGTGTCGGTCACTGAGTACAGCCAACTACTCACGCGGCAGGCGGCTGGCCG
                        gcttgat  putative branch site (score: 5)
                                          tttgttttc  putative PPT
         ttttttttgtt  TA-rich tract