1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtcggtgtttggtgcatgtgagtatgagttttaattaattacatgaaaaatatgtacaatacaaattcatgtgattgttactaacaaacttcttctgtagGATGCAAAACATGGATGCTAAGAAGAAAAAAGAACCTATTGGCTTCTTGGATCCAACTCAGATCTGTCAAACACAGCATACCGTGAGGCTAGCACCAGGG
species | Oryza sativa |
transcript | LOC_Os01g29850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaaaatatgtacaatacaaattcatgtgattgttactaacaaacttcttctgtagGATGCAAAACATGGATGCTAAGAAGAAAAAAGAACCTATTGGCTTCTTGGATCCAACTCAGATCTGTCAAACACAGCATACCGTGAGGCTAGCACCAGGG
tactaac putative branch site (score: 0)
cttcttctgt putative PPT
aatacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtgtttggtgcatgtgagtatgagttttaattaattacatgaaaaatatgtacaatacaaattcatgtgattgttactaacaaacttcttctgtagGATGCAAAACATGGATGCTAAGAAGAAAAAAGAACCTATTGGCTTCTTGGATCCAACTCAGATCTGTCAAACACAGCATACCGTGAGGCTAGCACCAGGG
- - gtgtttg
- - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - ttacatg
- - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa