1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaccactagaacttgttcattccgatctgtgcgaaatgaacaacgtgttgactaagggggaaagaaatatttcatgacactgatatatgattgcactagATTCTGCTATGTGTACCTATTGAAAACAAAGGACGAAGCATTACATTACTTTAAGATCTATAAGGCTGAGGTAGAAAACCAACTAGAAAGGAAAATCAAA
species | Oryza sativa |
transcript | LOC_Os01g29680.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gtgttgactaagggggaaagaaatatttcatgacactgatatatgattgcactagATTCTGCTATGTGTACCTATTGAAAACAAAGGACGAAGCATTACATTACTTTAAGATCTATAAGGCTGAGGTAGAAAACCAACTAGAAAGGAAAATCAAA
cactgat putative branch site (score: 3)
aaagaaatatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccactagaacttgttcattccgatctgtgcgaaatgaacaacgtgttgactaagggggaaagaaatatttcatgacactgatatatgattgcactagATTCTGCTATGTGTACCTATTGAAAACAAAGGACGAAGCATTACATTACTTTAAGATCTATAAGGCTGAGGTAGAAAACCAACTAGAAAGGAAAATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gtaccac
- - - - - - - - - cattccg
- - - - - - - - - - - - - -ctgtgcg
- - - - - - - - - - - - - - - - - - atgaaca
- - - - - - - - - - - - - - - - - - - - - - cgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatg