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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctgcatttttaattagctggttcttcacatgtgttatcattgatattagcgttgtcttaattggaagtactggatactgaaacatggttctttttagGAGGGAACAGGGGTGTTTACCCAACCTTACACACAATGTTGACAGAGCAGGTCGGGTGGCCGCTGGTGTTTTGGTCCTTTCATCAGCAACAAATGTAAAA

Basic information

species Oryza sativa
transcript LOC_Os01g28150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88226074|gb|CI225990.1|CI225990
EST:     AACATGTTCCATCTACTTGTACTGATTTATAGAACTTTGCTGGAGGTAAG                         GAGGGAACAGGGGTGTTTACCCAACCTTACACACAATGTTGACAGAGCAGG
genomic: AACATGTTCCATCTACTTGTACTGATTTATAGAACTTTGCTGGAGGTAAGgtattcctgt ... ttctttttagGAGGGAACAGGGGTGTTTACCCAACCTTACACACAATGTTGACAGAGCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattagcgttgtcttaattggaagtactggatactgaaacatggttctttttagGAGGGAACAGGGGTGTTTACCCAACCTTACACACAATGTTGACAGAGCAGGTCGGGTGGCCGCTGGTGTTTTGGTCCTTTCATCAGCAACAAATGTAAAA
            tcttaat  putative branch site (score: 3)
                                             ttcttttt  putative PPT
                                             ttcttttta  TA-rich tract