Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88366136|gb|CI550968.1|CI550968EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|86525950|gb|CI166156.1|CI166156EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|88220073|gb|CI219633.1|CI219633EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|86482617|gb|CI125250.1|CI125250EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|89177573|gb|CI390752.1|CI390752EST: GAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATT TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: GAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|89198394|gb|CI007454.1|CI007454EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|88276731|gb|CI397533.1|CI397533EST: CCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCCACAAATGC
genomic: CCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|89177733|gb|CI390912.1|CI390912EST: GCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: GCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|27921358|gb|CB097166.1|CB097166EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|86540804|gb|CI181010.1|CI181010EST: TGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
EST:
gi|25803841|gb|CA759802.1|CA759802EST: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATG TGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
genomic: TTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
48 (upstream exon),
66 (downstream exon)
Score:
17CACAGCTGATAAGAATGCTCATGAGGATGATTCCGGGAAAGAATGTGTGGTTTGCCTTTCTGAACCAAGAGATACTGCTGTTCTTCCATGCAGGCATATGgtaagttact ... atttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGCCCAATATGCAGGCAACCTGTTGAGGGCCTTCGCGAGATAGAGGTTGATA
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatcagttcagttttatgaaaatcaattaaagatagcatgtgccatttttgcagTGCCTGTGCAGGGAGTGTGCTCAAGTTTTAAAATATCAGACCAACAAATGCCCAATATGCAGGCAACCTGTTGAGGGCCTTCGCGAGATAGAGGTTGATA
tgctgat putative branch site (score: 17)
ccattttt putative PPT
ttttatgaaaatcaat TA-rich tract