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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaagtttcctagttcaaagggtgtatgagttgtgtgcatgcagtaagcacacgggctgaagtggcccatctgaatgtaactttcttttttccgtgtggtttcagGATGGATCTGCTATACGTCATAAGATTTTTTAG

Basic information

species Oryza sativa
transcript LOC_Os01g27219.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgggctgaagtggcccatctgaatgtaactttcttttttccgtgtggtttcagGATGGATCTGCTATACGTCATAAGATTTTTTAG
                        atgtaac  putative branch site (score: 3)
                              ctttcttttttccgtg  CT-rich tract
                           taactttctttttt  TA-rich tract