1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctttaagtaccaagtgcacttttttggatttgctatctactccacaatgtcttacctcatcagttagtgctaaagataattctttgtttgtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGACCAAGACGAGGAAGGTGCCTGTGCTGGAGGTGCCCTTGGCGTTGACCA
species | Oryza sativa |
transcript | LOC_Os01g26130.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGGATAAGAAGAGAAGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAG CTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGEST: gi|86873959|gb|CI334491.1|CI334491
genomic: AGAGGATAAGAAGAGAAGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAGgttagtgtaa ... gtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
EST: AGAGGATAAGAAGAGAAGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAG CTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGEST: gi|88957704|gb|CI095478.1|CI095478
genomic: AGAGGATAAGAAGAGAAGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAGgttagtgtaa ... gtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
EST: TCTGAAAAGATAAGAATAG CTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGEST: gi|88455789|gb|CI524208.1|CI524208
genomic: TCTGAAAAGATAAGAATAGgttagtgtaa ... gtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
EST: AGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAG CTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGEST: gi|89194668|gb|CI117105.1|CI117105
genomic: AGGGGTGTCCTTTTCTCTGAAAAGATAAGAATAGgttagtgtaa ... gtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
EST: CCTTTTCTCTGAAAAGATAAGAATAG CTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
genomic: CCTTTTCTCTGAAAAGATAAGAATAGgttagtgtaa ... gtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTG
caatgtcttacctcatcagttagtgctaaagataattctttgtttgtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGACCAAGACGAGGAAGGTGCCTGTGCTGGAGGTGCCCTTGGCGTTGACCA
tgctaaa putative branch site (score: 2)
ttctttgtttgttttt putative PPT
taaagataattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttaagtaccaagtgcacttttttggatttgctatctactccacaatgtcttacctcatcagttagtgctaaagataattctttgtttgtttttctagCTCTCTTCAAGTATGTTCAAGTAGGCTAGCGTGAAGGTTCTCAAGGAGGTGACCAAGACGAGGAAGGTGCCTGTGCTGGAGGTGCCCTTGGCGTTGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - -caagtgc
- - - - - - - - - - - - - - -tttgcta
- - - - - - - - - - - - - - - - - - - - ctccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagataa