1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttgaaactataagaacattacttataaaattacagtgatatggaggtgtttctccatttctattggaagcctgaggcgttgtttacattatcttccagGTGAAGCGAAGATGAGATTTGGGAGTATGATAAGCACATCCAACATTGTTCACGCAGAAAAGGTTACTGTACAATCCGATGCAGATCTTCTCTGGACAAT
species | Oryza sativa |
transcript | LOC_Os01g25440.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCACTACAACCACTGGCCTGAAGTGGAACTTGA GTGAAGCGAAGATGAGATTTGGGAGTATGATAAGCACATCCAACATTGTTC
genomic: AGCACTACAACCACTGGCCTGAAGTGGAACTTGAgtacatttct ... tatcttccagGTGAAGCGAAGATGAGATTTGGGAGTATGATAAGCACATCCAACATTGTTC
aggtgtttctccatttctattggaagcctgaggcgttgtttacattatcttccagGTGAAGCGAAGATGAGATTTGGGAGTATGATAAGCACATCCAACATTGTTCACGCAGAAAAGGTTACTGTACAATCCGATGCAGATCTTCTCTGGACAAT
ttatcttcc CT-rich tract
tttacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgaaactataagaacattacttataaaattacagtgatatggaggtgtttctccatttctattggaagcctgaggcgttgtttacattatcttccagGTGAAGCGAAGATGAGATTTGGGAGTATGATAAGCACATCCAACATTGTTCACGCAGAAAAGGTTACTGTACAATCCGATGCAGATCTTCTCTGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - gaaacta
- - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt