1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgttatattgtcacagttgagctttcttgttctgtacaataaaattatgcatttgtattgctctttattgattttaatgctgcctatacatttcatcagATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACTGTCGCCAAATTGAGAGGGGGAATTGGCTCTATGCAAATGGTTCGCGTCC
species | Oryza sativa |
transcript | LOC_Os01g24880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGGGACAGGTCCACGGCGAGGCTGCAGTGCGGCCACGAGTTCCACCTCG ATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACTEST: gi|29656889|gb|CB653164.1|CB653164
genomic: CGGGGACAGGTCCACGGCGAGGCTGCAGTGCGGCCACGAGTTCCACCTCGgtgagtggct ... atttcatcagATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACT
EST: CGGGGACAGGTCCACGGCGAGGCTGCAGTGCGGCCACGAGTTCCACCTCG ATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACT
genomic: CGGGGACAGGTCCACGGCGAGGCTGCAGTGCGGCCACGAGTTCCACCTCGgtgagtggct ... atttcatcagATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACT
ttatgcatttgtattgctctttattgattttaatgctgcctatacatttcatcagATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACTGTCGCCAAATTGAGAGGGGGAATTGGCTCTATGCAAATGGTTCGCGTCC
ttttaat putative branch site (score: 3)
tttcatc putative PPT
tctttattgattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttatattgtcacagttgagctttcttgttctgtacaataaaattatgcatttgtattgctctttattgattttaatgctgcctatacatttcatcagATTGCATTGGTTCAGCATTTAATGCCAAAGGAGTTATGCAATGCCCCAACTGTCGCCAAATTGAGAGGGGGAATTGGCTCTATGCAAATGGTTCGCGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgcc