1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcacgttgtggccagagtatcacgcttgctaatgcaattgcaacaagccttacctgttacatcggccatgttcccatgttcttgctgcttccgcaaaagGGGGTGTTGATGGAAACATTTTTGTTTCTCCCTACTTTAGAAAGGAATCGTGGGAGGCAACTTGGCGTGGTGAATTGCGTGGTTGGCGTGCCGTGTGTGA
species | Oryza sativa |
transcript | LOC_Os01g23930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aagccttacctgttacatcggccatgttcccatgttcttgctgcttccgcaaaagGGGGTGTTGATGGAAACATTTTTGTTTCTCCCTACTTTAGAAAGGAATCGTGGGAGGCAACTTGGCGTGGTGAATTGCGTGGTTGGCGTGCCGTGTGTGA
gccttac putative branch site (score: 3)
ttcttgctgcttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacgttgtggccagagtatcacgcttgctaatgcaattgcaacaagccttacctgttacatcggccatgttcccatgttcttgctgcttccgcaaaagGGGGTGTTGATGGAAACATTTTTGTTTCTCCCTACTTTAGAAAGGAATCGTGGGAGGCAACTTGGCGTGGTGAATTGCGTGGTTGGCGTGCCGTGTGTGA
- - - -tgtggcc
- - - - - - - - - - - -cgcttgc
- - - - - - - - - - - - - - - taatgca
- - - - - - - - - - - - - - - - - - - - -caacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgct