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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGCCACTGCAAGCATCTTGCTCCGgttagtggataactctacccaaagtttgttctacatgttatgtttacttttgaaagtttcagttgttctcgacgtgccaactaatattcttgttattattttag

Basic information

species Oryza sativa
transcript LOC_Os01g23740.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598802|gb|CK009330.1|CK009330
EST:     GTGTGGCCACTGCAAGCATCTTGCTCCG                         ATATATGAGAAGCTGGCTTCTGTTTATAAGTTGGACGATGGAGTTGTAATT
genomic: GTGTGGCCACTGCAAGCATCTTGCTCCGgttagtggat ... attattttagATATATGAGAAGCTGGCTTCTGTTTATAAGTTGGACGATGGAGTTGTAATT
EST: gi|58666550|gb|CK055236.1|CK055236
EST:     GTGTGGCCACTGCAAGCATCTTGCTCCG                         ATATATGAGAAGCTGGCTTCTGTTTATAAGTTGGACGATGGAGTTGTAATT
genomic: GTGTGGCCACTGCAAGCATCTTGCTCCGgttagtggat ... attattttagATATATGAGAAGCTGGCTTCTGTTTATAAGTTGGACGATGGAGTTGTAATT