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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcctactcttactccccttcaatttcccccccaaattgaattcgaatcaaacagccgcctcacgccctcccctcaaatatgcagCCCTCGCCACGCCACGCCACGCGCGAGCGCCGCCGCCGCGACTGATCACGGCTCGGCTAGCTCTCTCTATCTCGCTGACTAATTAATCCTCTCTCCTTCT

Basic information

species Oryza sativa
transcript LOC_Os01g23710.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88402998|gb|CI568772.1|CI568772
EST:     GCATACCAAAATTGGAAATAGCAGCCGGTCTCTTACATCATATTTGCACC                         CCCTCGCCACGCCACGCCACGCGCG
genomic: GCATACCAAAATTGGAAATAGCAGCCGGTCTCTTACATCATATTTGCACCgtattcctac ... aaatatgcagCCCTCGCCACGCCACGCCACGCGCG
EST: gi|14713677|gb|AU197650.1|AU197650
EST:     CATACCAAAATTGGAAATAGCAGCCCGGTCTCTTACATCATATTTGCACC                         CCCTCGCCACGCCACGCCACGCGCGAGCGCCGCCGCCGNGACTGATCACGG
genomic: CATACCAAAATTGGAAATAGCAGCC-GGTCTCTTACATCATATTTGCACCgtattcctac ... aaatatgcagCCCTCGCCACGCCACGCCACGCGCGAGCGCCGCCGCCGCGACTGATCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaaattgaattcgaatcaaacagccgcctcacgccctcccctcaaatatgcagCCCTCGCCACGCCACGCCACGCGCGAGCGCCGCCGCCGCGACTGATCACGGCTCGGCTAGCTCTCTCTATCTCGCTGACTAATTAATCCTCTCTCCTTCT
                           gcctcac  putative branch site (score: 3)
                                   ccctcccctca  CT-rich tract
     attgaatt  TA-rich tract