1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgggaagcgaggataacaacacatgttcatgcaaatgcaataatcctaagcttttgcacataccatgctcacatgttttggccgcacgtgcgaaaatagGGTTGGACAGCACAGCATACGTCTCTCCTTTCTACTTGAAGGATAGAGTGTTGCAAGCTTGGTCCGCAGATATACTAGGCTATCGGGCACATGAGAACCT
species | Oryza sativa |
transcript | LOC_Os01g23420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
cctaagcttttgcacataccatgctcacatgttttggccgcacgtgcgaaaatagGGTTGGACAGCACAGCATACGTCTCTCCTTTCTACTTGAAGGATAGAGTGTTGCAAGCTTGGTCCGCAGATATACTAGGCTATCGGGCACATGAGAACCT
tgctcac putative branch site (score: 2)
aaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggaagcgaggataacaacacatgttcatgcaaatgcaataatcctaagcttttgcacataccatgctcacatgttttggccgcacgtgcgaaaatagGGTTGGACAGCACAGCATACGTCTCTCCTTTCTACTTGAAGGATAGAGTGTTGCAAGCTTGGTCCGCAGATATACTAGGCTATCGGGCACATGAGAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - -caacaca
- - - - - - - - - - -acatgtt
- - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - -aaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcacg