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gtaatcatctcttcctcattgagttatttttctttagtgacacttctcttccttgtattgaattaactttctttttggtggtgccttgctcatataccccacccaatttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATGTGAGTAAAAGCTTCAGTTTTGCCTAATCTTCTCTGCAATAGCTCAGTGT
species | Oryza sativa |
transcript | LOC_Os01g22390.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCG CTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATGEST: gi|88512527|gb|CI440033.1|CI440033
genomic: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCGgtaatcatct ... atttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATG
EST: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCG CTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATGEST: gi|88511026|gb|CI438532.1|CI438532
genomic: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCGgtaatcatct ... atttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATG
EST: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCG CTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATG
genomic: GAACAGAAGATGGTTTTCTCAAAATCTGCCACTAGTTGCCTGTAGTAGCGgtaatcatct ... atttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATG
aattaactttctttttggtggtgccttgctcatataccccacccaatttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATGTGAGTAAAAGCTTCAGTTTTGCCTAATCTTCTCTGCAATAGCTCAGTGT
aattaac putative branch site (score: 1)
tttcatc putative PPT
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatctcttcctcattgagttatttttctttagtgacacttctcttccttgtattgaattaactttctttttggtggtgccttgctcatataccccacccaatttcatcagCTGTTATTGTAGAATACCGCCAAAGCGATGTAACATGCTGTAAATTCCATGTGAGTAAAAGCTTCAGTTTTGCCTAATCTTCTCTGCAATAGCTCAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA