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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgaacgtcattgtgctagtactcgaaaatctattagtaagttttgtttttctaatttaagctttgatgatgatgacgcacaaatgtttcctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCGCCATATTGAAATGTAATGAGGGCTGGAATTATGTATCAATGCATCTTGT

Basic information

species Oryza sativa
transcript LOC_Os01g21180.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g21180.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G180990_T01 (Zea mays), 3'ss of exon 7
-tctg-aacgtcattgtgctagtactcgaaa-atctat---tagtaagttttgtttttctaatttaagctttgatgatgatgacgcacaaatgtttcctttgacagATGGAACGGCTCGAATAAGTAAAATCCACT-AGGGAAGCATAATTTGCTGCG--CCATATTGAAATGTA-ATGAGGGCTGGAATTATGTATCAATGCATCTTGT
  ||| |  |  |||||          |||| | ||     || ||  | | | || | |   || | ||| | ||||  |||| |||   | ||||||| ||||||||||||||||||||| |||| ||| | || ||||   ||||| |||| ||    | ||||||     | ||||   | | |      |||     || |    
tgctgcagtgagattgtatggagggaagaaagagctgagtgtaatatatctaggttctttg--ttcaacttgggtgatattgac-cac---tttttccttggacagATGGAACGGCTCGAATGAGTAGAATTCTCTGAGGGGTTCATAACTTGCGGCAGATCGTATTGATGGACATATGAAACCAGCAGGACCCTATTTGCACAGC----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88524395|gb|CI452304.1|CI452304
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGGTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88831835|gb|CI369517.1|CI369517
EST:     AAGGAATTGGAGTTTACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88502513|gb|CI430019.1|CI430019
EST:     TTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: TTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88548030|gb|CI476938.1|CI476938
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88552046|gb|CI482158.1|CI482158
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88511837|gb|CI439343.1|CI439343
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88661141|gb|CI451114.1|CI451114
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|29289887|gb|CB483501.1|CB483501
EST:     AAGGAATTGGAGTTGAC-ATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88835943|gb|CI371048.1|CI371048
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTCTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88529774|gb|CI458120.1|CI458120
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|29687412|gb|CB683687.1|CB683687
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88381483|gb|CI528463.1|CI528463
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|33682858|gb|CF311097.1|CF311097
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88473032|gb|CI410303.1|CI410303
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88438177|gb|CI538536.1|CI538536
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88523022|gb|CI450821.1|CI450821
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88469391|gb|CI406662.1|CI406662
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88531796|gb|CI460307.1|CI460307
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88542015|gb|CI471322.1|CI471322
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|3763091|gb|AU029843.1|AU029843
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGNCCTGTGGAAG                         ATGGANCGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTT-NTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88538867|gb|CI467928.1|CI467928
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|33688444|gb|CF316683.1|CF316683
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|55410731|gb|CV723107.1|CV723107
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88414188|gb|CI533558.1|CI533558
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88296856|gb|CI540208.1|CI540208
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88852472|gb|CI374240.1|CI374240
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|86522655|gb|CI162861.1|CI162861
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88506057|gb|CI433563.1|CI433563
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88541753|gb|CI471041.1|CI471041
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88514235|gb|CI441741.1|CI441741
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|58030638|gb|CX728181.1|CX728181
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88508109|gb|CI435615.1|CI435615
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|89196306|gb|CI397308.1|CI397308
EST:     AAGG-ATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88549468|gb|CI479359.1|CI479359
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88283934|gb|CI405380.1|CI405380
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88534347|gb|CI463065.1|CI463065
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88531245|gb|CI459707.1|CI459707
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|55410246|gb|CV722622.1|CV722622
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88553940|gb|CI484084.1|CI484084
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88480133|gb|CI417404.1|CI417404
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88297527|gb|CI550590.1|CI550590
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88484301|gb|CI421572.1|CI421572
EST:     AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: AAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
EST: gi|88297393|gb|CI547871.1|CI547871
EST:     TATGCACTATCTAAATGATGGCCTGTGGAAG                         ATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG
genomic: TATGCACTATCTAAATGATGGCCTGTGGAAGgtactctgtt ... cctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttctaatttaagctttgatgatgatgacgcacaaatgtttcctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCGCCATATTGAAATGTAATGAGGGCTGGAATTATGTATCAATGCATCTTGT
                                        tgtttccttt  CT-rich tract
     ttctaatttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgaacgtcattgtgctagtactcgaaaatctattagtaagttttgtttttctaatttaagctttgatgatgatgacgcacaaatgtttcctttgacagATGGAACGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCGCCATATTGAAATGTAATGAGGGCTGGAATTATGTATCAATGCATCTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-ctgaacg
- - - - - attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa