1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgtattccccctgctttttccatcacattgttctatctatgcgattgcttttctgaaggtgatccgattcgcatttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAG
species | Oryza sativa |
transcript | LOC_Os01g17180.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCCANGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88416368|gb|CI540909.1|CI540909
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88553514|gb|CI483630.1|CI483630
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88538051|gb|CI467047.1|CI467047
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88848981|gb|CI087503.1|CI087503
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88551721|gb|CI481803.1|CI481803
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|58694676|gb|CK083363.1|CK083363
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88445960|gb|CI549683.1|CI549683
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|87026033|gb|CI250049.1|CI250049
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88458926|gb|CI555607.1|CI555607
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88542684|gb|CI472028.1|CI472028
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88464675|gb|CI534812.1|CI534812
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88450658|gb|CI547158.1|CI547158
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88523107|gb|CI450909.1|CI450909
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88248988|gb|CI248837.1|CI248837
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: CCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88246436|gb|CI246285.1|CI246285
genomic: CCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88525912|gb|CI452953.1|CI452953
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|86849423|gb|CI299644.1|CI299644
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|86487402|gb|CI130035.1|CI130035
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|86426049|gb|CI071146.1|CI071146
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTATTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|86831610|gb|CI301460.1|CI301460
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|15853965|gb|BI806761.1|BI806761
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88551722|gb|CI481804.1|CI481804
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|89161899|gb|CI102247.1|CI102247
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88902713|gb|CI088251.1|CI088251
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88481305|gb|CI418576.1|CI418576
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|163927941|gb|EG713517.1|EG713517
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTEST: gi|88297119|gb|CI545209.1|CI545209
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
EST: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAG GTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
genomic: ATCCAGGGCCACATAGATCAGGTGAACAAGTTACTAGAACGTGGTGACAGgtgcgtattc ... catttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCT
attgttctatctatgcgattgcttttctgaaggtgatccgattcgcatttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAG
tatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtattccccctgctttttccatcacattgttctatctatgcgattgcttttctgaaggtgatccgattcgcatttcgcagGTCGAAGGGAATGAGGAAATACCAAGCCATAGACAAGTGGAATACTCAGCTGAAGAACATCTACCAAACGGTGTCCAACAGAGTTGGGTGAGAGAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC