1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGTATGCTTTCCACTATGCCAAGACCAATGGCCGGGAGAGGGTCTCTGCGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgctacctgttccttctaacttgatggaatgtattccttaattcatatcactgggagctgatgttctgtttgttctttgttttactttcag
species | Oryza sativa |
transcript | LOC_Os01g16900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|218503212|gb|FG950056.1|FG950056
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|14571344|gb|BI118712.1|BI118712
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTC-TCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCEST: gi|27554384|gb|CA998284.1|CA998284
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCCAG TGCTGTCGCGAAGTGGCTGACAAGTACCCTGAAEST: gi|27554418|gb|CA998318.1|CA998318
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAA
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|41883639|gb|BX928526.1|BX928526
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGGCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29639681|gb|CB644690.1|CB644690
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAAGAGGTCEST: gi|58593071|gb|CF991379.1|CF991379
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|55410961|gb|CV723337.1|CV723337
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29619530|gb|CB624542.1|CB624542
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29664535|gb|CB660810.1|CB660810
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: GCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|58669476|gb|CK058162.1|CK058162
genomic: GCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|58691994|gb|CK080681.1|CK080681
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: GATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTEST: gi|66923182|gb|CX110030.1|CX110030
genomic: GATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCC-TCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGT
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAAEST: gi|27554444|gb|CA998344.1|CA998344
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAA
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29616640|gb|CB621652.1|CB621652
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|4714232|gb|AU058199.1|AU058199
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29671573|gb|CB667848.1|CB667848
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: GGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|86900281|gb|CI296324.1|CI296324
genomic: GGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTCEST: gi|29664534|gb|CB660809.1|CB660809
genomic: CATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
EST: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAG TGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
genomic: CGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgc ... ttactttcagTGCTGTCGTGAAGTGGCTGAGAAGTACCCTGAAATTGTATACGAGGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTATGCTTTCCACTATGCCAAGACCAATGGCCGGGAGAGGGTCTCTGCGATACACAAGGCCAATATCATGAGGAAGACCGATGGTCTTTTCCTCAAGgtctgtttgctacctgttccttctaacttgatggaatgtattccttaattcatatcactgggagctgatgttctgtttgttctttgttttactttcag
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