Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89165680|gb|CI102770.1|CI102770EST: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAGCTA
genomic: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGAT--GC-GC-Agctacgtggg ... tttattt
EST:
gi|89165680|gb|CI102770.1|CI102770EST: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAGCTA
genomic: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGAT--GC-GC-Agctacgtggg ... tttattt
EST:
gi|88207796|gb|CI207645.1|CI207645EST: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAGCTA
genomic: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGAT--GC-GC-Agctacgtggg ... tttattt
EST:
gi|88207796|gb|CI207645.1|CI207645EST: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAGCTA
genomic: CCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGAT--GC-GC-Agctacgtggg ... tttattt
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGCTCGCGCGACGCGCGCTGCCGCATGGTGTGGTGGGTGGACGGCCGCCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAgctacgtgggcaacgtcacgaccttcgcggaacatgtgtctatttgccgtgtgtagattatatcaattaacccttgtgtctaatttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT