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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGACAAATCTCCGGTCTTTGCAAGATGCAACTCATTTGCTCATCTCCATTCCACCCATCCCGGGAATTGGTGATCCTgtacgttctcaattgcttgttgatgtcagttcgattgacttaaattccatctaaatttaacataataatgattaaatttgcatctaatatctacag

Basic information

species Oryza sativa
transcript LOC_Os01g15660.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15660.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G119749_T04 (Zea mays), 5'ss of exon 3
TCTGACAAATCTCCGGTCTTTGCAAGATGCAACTCATTTGCTCATCTCCATTCCACCCATCCCGGGAATTGGTGATCCTgtacgttctcaattgcttgttgatgtca---gttcgattgactta-aattccatctaaatttaacataataatgattaaatttgcatctaatatctacag
 |||  |||| | |    ||| | | | |||||||| |||||||||||||| ||||||||||| ||| |||||||||||||| ||| |   |   |  ||  |  ||   ||| |||     || ||| | | ||  |||| || | ||  |     |||||||| ||  || |  |||
CCTGGAAAATATTCACAGTTTACGACAAGCAACTCACTTGCTCATCTCCATCCCACCCATCCCTGGAGTTGGTGATCCTgtaagttgtatgtcaatcattacttgcatttgtttgatcaggctataatgctaactggatttcactttatggt-----aatttgcaccttttacccccag