Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29674694|gb|CB670969.1|CB670969EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|29677177|gb|CB673452.1|CB673452EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|88265547|gb|CI376449.1|CI376449EST: ATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: ATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|89177289|gb|CI250738.1|CI250738EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|88986554|gb|CI033697.1|CI033697EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|86483066|gb|CI125699.1|CI125699EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|29642827|gb|CB647834.1|CB647834EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|88472748|gb|CI410019.1|CI410019EST: GCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST:
gi|66921834|gb|CX108682.1|CX108682EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGACAGAAATCGAGGGAATCCAAACAGTACACTGCACGAATTCATGTGGCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgtttattttttattttttacttcaggtcttcaaaacggctgctacttttccagtttttctgccttcaatcatattttcaaactagtttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT