1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgaactaggagagcatgagctcccccatttccattagaagaaacaacctttgaaggttgataactgattccatgtatgtgtggcaactttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTCGCATTTGCTCGGAGCTTGGTTGAGAGGAAGCATCCTGGCCTGATAATG
species | Oryza sativa |
transcript | LOC_Os01g15660.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|89177289|gb|CI250738.1|CI250738
genomic: ATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|88986554|gb|CI033697.1|CI033697
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|86849383|gb|CI297828.1|CI297828
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|86483066|gb|CI125699.1|CI125699
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|88472748|gb|CI410019.1|CI410019
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTEST: gi|66921834|gb|CX108682.1|CX108682
genomic: GCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
EST: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAG GAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
genomic: GCTGACATTTGTCAGGCTATCCTGGCTAGCATGAGCATCAGAAGTGCAAGgtttgtttgt ... ttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTT
caacctttgaaggttgataactgattccatgtatgtgtggcaactttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTCGCATTTGCTCGGAGCTTGGTTGAGAGGAAGCATCCTGGCCTGATAATG
ctttatttct CT-rich tract
aactttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaactaggagagcatgagctcccccatttccattagaagaaacaacctttgaaggttgataactgattccatgtatgtgtggcaactttatttctagGAGGATATACAACGTAGTGGATGACGACCCTGCCCCAAGATCTGAGGTTTTCGCATTTGCTCGGAGCTTGGTTGAGAGGAAGCATCCTGGCCTGATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - gagcatg
- - - - - - - - - -agctccc
- - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg