Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtagttcatcagtaactatttcaaaagggataacaacatatgtagttgaattattttacacatatttttacagcttaccttgacatattcatgtttaattgttgacagGATGTGAATCCAAAACATTGATGCTTGTCCATATCAGCCCAGATGAGGGTGATTTGTGTGAGACAATTTGCACCTTGGGTTTTGCAACAAGAGTGAGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g15540.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15540.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G018951_T04 (Zea mays), 3'ss of exon 9
gtaaagtagttcatcagtaactatttcaaaagggataacaacatatgtagttgaattattttacaca-----tatttttacagcttaccttgacatattcatgtttaattgttgacagGATGTGAATCCAAAACATTGATGCTTGTCCATATCAGCCCAGATGAGGGTGATTTGTGTGAGACAATTTGCACCTTGGGTTTTGCAACAAGAGTGAGAAG
|||| ||||    ||| | ||  || || ||  |   | || | |||  | |   |||||||||| |     | || ||  |||| | ||||   ||||| |         || ||||||||||| ||||||||  | |||||||| |||||| | ||| |||||| ||||||||||||||  || || |||||||||||||| |||||||| |||||
gtaa-gtagcatctcactgacagttccataaatgc--agaaaaaatgctgctttcttattttacaaactcagttttcttgtagctcatcttggtgtattcgtt--------ttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGATTTGTGTGAGAGCATCTGTACCTTGGGTTTTGCGACAAGAGTCAGAAG

upper sequence: LOC_Os01g15540.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G018951_T01 (Zea mays), 3'ss of exon 9
gtaaagtagttcatcagtaactatttcaaaagggataacaacatatgtagttgaattattttacaca-----tatttttacagcttaccttgacatattcatgtttaattgttgacagGATGTGAATCCAAAACATTGATGCTTGTCCATATCAGCCCAGATGAGGGTGATTTGTGTGAGACAATTTGCACCTTGGGTTTTGCAACAAGAGTGAGAAG
        |    ||| | ||  || || ||  |   | || | |||  | |   |||||||||| |     | || ||  |||| | ||||   ||||| |         || ||||||||||| ||||||||  | |||||||| |||||| | ||| |||||| ||||||||||||||  || || |||||||||||||| |||||||| |||||
--------gcatctcactgacagttccataaatgc--agaaaaaatgctgctttcttattttacaaactcagttttcttgtagctcatcttggtgtattcgtt--------ttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGATTTGTGTGAGAGCATCTGTACCTTGGGTTTTGCGACAAGAGTCAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttacacatatttttacagcttaccttgacatattcatgtttaattgttgacagGATGTGAATCCAAAACATTGATGCTTGTCCATATCAGCCCAGATGAGGGTGATTTGTGTGAGACAATTTGCACCTTGGGTTTTGCAACAAGAGTGAGAAG
                               atattcatgtttaatt  TA-rich tract