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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCACTTAGTCAGCATACAGTTCAGATCAACCCTGTACTAGTTGGTGACTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaactgatcttgactttgctctatatattacaatgccgcagtttattttagtgttaaggtagagaacactgtaagactacttcagtttttttt...

Basic information

species Oryza sativa
transcript LOC_Os01g14932.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14932.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G180065_T03 (Zea mays), 5'ss of exon 3
TATTCACTTAGTCAGCATACAGTTCAGATCAACCCTGTACTAGTTGGTGACTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaactgatcttgactttgctctatatattacaatgccgcagtttattttagtgttaaggtagagaacactgtaagactacttcagtttttttt--
|||||||||| || ||||||||||| |||  | |||||  | || || ||||| ||||||||||||||||| ||||||||| || ||| || |||||| ||||||        ||||||   ||| ||| | | | | ||||       || | ||| |||  ||| |||||| | | |  || || ||  ||| || ||  
TATTCACTTACTCTGCATACAGTTCGGATTGATCCTGTGTTGGTCGGGGACTATAATCTTCTTAATTTAACTTGGTTCAGGTCATTGGCTCCAGCTCCAGgtaatagctttcaatcttgtacttgttctgtttgtcataatgagagtagttttgttactgtccaggaagagaa-attctg-gattatttttgttcttattgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667232|gb|CK055918.1|CK055918
EST:     CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTG                         CTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
genomic: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaa ... tctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
EST: gi|29619779|gb|CB624791.1|CB624791
EST:     CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTG                         CTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG
genomic: CTACAATCTTCTTAATTTAACCTGGTTCAGGCCACTGGTTCTAGCTCCTGgtaatgctaa ... tctatttcagCTCCAACATTCACAATATCACCTAAACCCTCTCCATCTCAAGCATCTACAG