1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcttaaccaaatttaaatgaattatgcttattttctggttcattatgcatgttggagcattcttttaggagcattaataatatcagttctcctgtgcagCCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCCCAACAAGTACAAGGTTCCTTGCATATGATGAACTGAAAGAAGCAACCAA
species | Oryza sativa |
transcript | LOC_Os01g14932.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGCAAATTAAGGAAAGGGAAAAGGAAGGTTCCTCCAGTTGAGACAC CCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCCEST: gi|29619779|gb|CB624791.1|CB624791
genomic: CTTCTGCAAATTAAGGAAAGGGAAAAGGAAGGTTCCTCCAGTTGAGACACgtacgtgcag ... tcctgtgcagCCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCC
EST: CTTCTGCAAATTAAGGAAAGGGAAAAGGAAGGTTCCTCCAGTTGAGACAC CCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCC
genomic: CTTCTGCAAATTAAGGAAAGGGAAAAGGAAGGTTCCTCCAGTTGAGACACgtacgtgcag ... tcctgtgcagCCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCC
atgcatgttggagcattcttttaggagcattaataatatcagttctcctgtgcagCCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCCCAACAAGTACAAGGTTCCTTGCATATGATGAACTGAAAGAAGCAACCAA
cattaat putative branch site (score: 16)
ttctcctgt putative PPT
attaataatatcagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttaaccaaatttaaatgaattatgcttattttctggttcattatgcatgttggagcattcttttaggagcattaataatatcagttctcctgtgcagCCAAGCAAAGAACACCAGATGCGGTTTCTGCAGTGGACTCACTTCCTCGCCCAACAAGTACAAGGTTCCTTGCATATGATGAACTGAAAGAAGCAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA