1 5' 3' | 2 5' 3' |
...cacatgcatgaaagttttttcccctaaaaattgataattagtttcatggaagtaaatttaccttgttgtaacatttccatcatttgtgcatgttttgaagGTTATGACGATTAAAAGGGGGGAAAAAAAGGTGCTCCTCCGGTGAGTACGAGGAATTCAGCTAAGTCTAGCTCACCGGCCGGTCATGACTTTGTCCTGAT
species | Oryza sativa |
transcript | LOC_Os01g14220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atggaagtaaatttaccttgttgtaacatttccatcatttgtgcatgttttgaagGTTATGACGATTAAAAGGGGGGAAAAAAAGGTGCTCCTCCGGTGAGTACGAGGAATTCAGCTAAGTCTAGCTCACCGGCCGGTCATGACTTTGTCCTGAT
ttgtaac putative branch site (score: 1)
agtaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatgcatgaaagttttttcccctaaaaattgataattagtttcatggaagtaaatttaccttgttgtaacatttccatcatttgtgcatgttttgaagGTTATGACGATTAAAAGGGGGGAAAAAAAGGTGCTCCTCCGGTGAGTACGAGGAATTCAGCTAAGTCTAGCTCACCGGCCGGTCATGACTTTGTCCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - tgcatga
- - - - - - - - - - - cctaaaaa
- - - - - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - gaagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc