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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaatttagcttctcctgcttctcttttatgcctattgctatttattctcttttacgcctatccttattcttttcctgacgattgatatgcaaat...

Basic information

species Oryza sativa
transcript LOC_Os01g14140.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88412635|gb|CI690381.1|CI690381
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|325494157|gb|JG458681.1|JG458681
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         ATAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|88851563|gb|CI671003.1|CI671003
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|86260931|gb|CI066606.1|CI066606
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|88571066|gb|CI662439.1|CI662439
EST:     --AGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|88741066|gb|CI764574.1|CI764574
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|163927940|gb|EG713516.1|EG713516
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
EST: gi|66913626|gb|CX100474.1|CX100474
EST:     GAAGCACCATTCGACTTGCTGAGGGACAG                         AAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG
genomic: GAAGCACCATTCGACTTGCTGAGGGACAGgtacctaaat ... accaacacagAAAACTTGGTGCGTGGCGAAGCCGTCAGCAGATGACAAGGTTCTTACGGCG