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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGgcaagttggacctttcctatggctacagtttggagtcttatgtacacttggattggaaaaattcgttgaaaatattacgagttgcttcacaatattacccaacttacaagattgcaaacatttcctttttcttctttttttttgaaatag

Basic information

species Oryza sativa
transcript LOC_Os01g13570.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13570.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G114550_T01 (Zea mays), 5'ss of exon 4
GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGgcaagttg---gacctttcctatggctacagtttggagtcttatgtacacttggattggaaaaattcgttgaaaatatt--acgag-ttgcttcacaatattacccaacttacaagattgcaaacatttcctttttcttctttttttttgaaatag-----------------------
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GGAGAGAACTTCTTGGTGGTTACACACAAATCCATTTTGCGCGCGCTCATCTGCACAGCGCTGGGTATACCTCCTGAGAGgcaagtcgtctgaacttttctgtggctccaattctgg---ctaactttatttgtcccacgttcaacgtctggaaatttttaatgaaattgtttgtcagtgttatgtcaccaagatttatacaaaaaacttgttttt-ttttcctttcctcaaatactccagctagtgaataatatgcag